| distance | reference number | name | latitude | longitude |
| 2.5 | 397 | Calaveras Point, west of, San Francisco Bay, Califo | 37.4667 | -122.067 |
| 2.8 | 2179 | Palo Alto Yacht Harbor, California | 37.4583 | -122.105 |
| 3.6 | 669 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.4633 | -122.023 |
| 3.7 | 668 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.465 | -122.023 |
| 3.8 | 3187 | Upper Guadalupe Slough, San Francisco Bay, Californ | 37.435 | -122.007 |
| 5.0 | 1905 | Mowry Slough, San Francisco Bay, California | 37.5 | -122.033 |
| 5.5 | 1986 | Newark Slough, San Francisco Bay, California | 37.5167 | -122.083 |
| 5.5 | 826 | Dumbarton Bridge, California | 37.5067 | -122.115 |
| 5.5 | 827 | Dumbarton Bridge, San Francisco Bay, California | 37.5067 | -122.115 |
| 5.7 | 1116 | Gold Street Bridge, Alviso Slough, San Francisco Ba | 37.4233 | -121.975 |
| 6.4 | 670 | Coyote Creek, Tributary #1, San Francisco Bay, Cali | 37.45 | -121.967 |
| 8.7 | 3302 | West Point Slough, San Francisco Bay, California | 37.505 | -122.192 |
| 8.9 | 671 | Coyote Hills Slough entrance, San Francisco Bay, Ca | 37.5633 | -122.128 |
| 9.4 | 2856 | South Bay Wreck, San Francisco Bay, California | 37.55 | -122.167 |
| 9.5 | 2522 | Redwood Creek entrance (inside), San Francisco Bay, | 37.5167 | -122.2 |
| 9.5 | 1138 | Granite Rock, Redwood Creek, San Francisco Bay, Cal | 37.495 | -122.213 |
| 9.7 | 2520 | Redwood City, Wharf 5, California | 37.5067 | -122.21 |
| 9.7 | 2521 | Redwood City, Wharf 5, San Francisco Bay, Californi | 37.5067 | -122.21 |
| 9.8 | 2523 | Redwood Creek, C.M. No. 8, San Francisco Bay, Calif | 37.5333 | -122.193 |
| 9.9 | 643 | Corkscrew Slough, San Francisco Bay, California | 37.5 | -122.217 |
| 10.1 | 2524 | Redwood Creek, Marker 8, California | 37.5333 | -122.2 |
| 10.7 | 2823 | Smith Slough, San Francisco Bay, California | 37.5 | -122.233 |
| 11.1 | 23 | Alameda Creek, San Francisco Bay, California | 37.595 | -122.145 |
| 11.6 | 182 | Bay Slough, east end, San Francisco Bay, California | 37.545 | -122.222 |
| 12.4 | 2655 | San Mateo Bridge (east end), San Francisco Bay, Cal | 37.6 | -122.183 |