| distance | reference number | name | latitude | longitude |
| 94.8 | 3137 | Troy, Hudson River, New York | 42.7333 | -73.7 |
| 95.1 | 2552 | Riverside, Merrimack River, Massachusetts | 42.7633 | -71.0767 |
| 95.6 | 807 | Dover, Piscataqua River, Cocheco River, New Hampshi | 43.1983 | -70.8683 |
| 95.9 | 2903 | Squamscott River RR. Bridge, Piscataqua River, New | 43.0533 | -70.9133 |
| 97.7 | 1811 | Merrimacport, Merrimack River, Massachusetts | 42.825 | -70.9883 |
| 98.3 | 2637 | Salmon Falls River entrance, Piscataqua River, New | 43.19 | -70.825 |
| 99.1 | 805 | Dover Point, Piscataqua River, New Hampshire | 43.1167 | -70.8333 |
| 100.0 | 28 | Albany, Hudson River, New York | 42.65 | -73.7467 |
| 101.5 | 2635 | Salisbury Point, Merrimack River, Massachusetts | 42.8383 | -70.9083 |
| 103.4 | 111 | Atlantic Heights, Piscataqua River, New Hampshire | 43.09 | -70.7667 |
| 104.5 | 2436 | Portsmouth, Portsmouth Harbor, New Hampshire | 43.0783 | -70.7517 |
| 104.5 | 2727 | Seavey Island, Portsmouth Harbor, Maine (sub) | 43.0833 | -70.75 |
| 104.6 | 1989 | Newburyport, Merrimack River, Massachusetts | 42.8117 | -70.865 |
| 104.8 | 1209 | Hampton Harbor, New Hampshire | 42.9 | -70.8167 |
| 105.0 | 2726 | Seavey Island, Portsmouth Harbor, Maine | 43.08 | -70.7417 |
| 105.3 | 480 | Castleton-on-Hudson, Hudson River, New York | 42.5333 | -73.7667 |
| 106.0 | 1408 | Jaffrey Point, Portsmouth Harbor, Maine | 43.0567 | -70.7317 |
| 106.8 | 2284 | Plum Island, Merrimack River Entrance, Merrimack Ri | 42.8167 | -70.82 |
| 106.9 | 1033 | Fort Point, New Hampshire | 43.0717 | -70.7117 |
| 106.9 | 1034 | Fort Point, Portsmouth Harbor, New Hampshire | 43.0717 | -70.7117 |
| 107.1 | 1532 | Kittery Point, Portsmouth Harbor, Maine | 43.0817 | -70.7033 |
| 107.9 | 1099 | Gerrish Island, Portsmouth Harbor, New Hampshire | 43.0667 | -70.695 |
| 108.9 | 51 | Amelia Earhart Dam, Mystic River, Massachusetts | 42.395 | -71.0767 |
| 109.5 | 2721 | Seapoint, Cutts Island, Maine | 43.085 | -70.6617 |
| 109.8 | 3412 | York Harbor, Maine | 43.1317 | -70.6417 |